bfast-0.7.0a-18.fc29 | Build Info

Information for build bfast-0.7.0a-18.fc29

42733

Package Name

bfast

Version

0.7.0a

Release

18.fc29

Epoch

Summary

Blat-like Fast Accurate Search Tool

Description

BFAST facilitates the fast and accurate mapping of short reads to reference sequences. Some advantages of BFAST include: Speed: enables billions of short reads to be mapped quickly. Accuracy: A priori probabilities for mapping reads with defined set of variants. An easy way to measurably tune accuracy at the expense of speed. Specifically, BFAST was designed to facilitate whole-genome resequencing, where mapping billions of short reads with variants is of utmost importance. BFAST supports both Illumina and ABI SOLiD data, as well as any other Next-Generation Sequencing Technology (454, Helicos), with particular emphasis on sensitivity towards errors, SNPs and especially indels. Other algorithms take short-cuts by ignoring errors, certain types of variants (indels), and even require further alignment, all to be the "fastest" (but still not complete). BFAST is able to be tuned to find variants regardless of the error-rate, polymorphism rate, or other factors.

Built by

davidlt

State

complete

Volume

DEFAULT

Started

Sun, 10 Jun 2018 21:37:27 UTC

Completed

Sun, 10 Jun 2018 23:01:51 UTC

Task

build (f29-candidate, bfast-0.7.0a-18.fc29.src.rpm)

Tags

f29

RPMs

src
	bfast-0.7.0a-18.fc29.src.rpm (info) (download)
riscv64
	bfast-0.7.0a-18.fc29.riscv64.rpm (info) (download)
	bfast-debuginfo-0.7.0a-18.fc29.riscv64.rpm (info) (download)
	bfast-debugsource-0.7.0a-18.fc29.riscv64.rpm (info) (download)

Logs

riscv64
	build.log
	hw_info.log
	mock_output.log
	root.log
	state.log

Changelog

* Wed Feb 07 2018 Fedora Release Engineering <releng@fedoraproject.org> - 0.7.0a-18 - Rebuilt for https://fedoraproject.org/wiki/Fedora_28_Mass_Rebuild * Wed Aug 02 2017 Fedora Release Engineering <releng@fedoraproject.org> - 0.7.0a-17 - Rebuilt for https://fedoraproject.org/wiki/Fedora_27_Binutils_Mass_Rebuild * Wed Jul 26 2017 Fedora Release Engineering <releng@fedoraproject.org> - 0.7.0a-16 - Rebuilt for https://fedoraproject.org/wiki/Fedora_27_Mass_Rebuild * Fri Feb 10 2017 Fedora Release Engineering <releng@fedoraproject.org> - 0.7.0a-15 - Rebuilt for https://fedoraproject.org/wiki/Fedora_26_Mass_Rebuild * Fri Feb 19 2016 Ralf Corsépius <corsepiu@fedoraproject.org> - 0.7.0a-14 - Let configure honor CFLAGS (F24FTBFS, RHBZ#1307345). - Append -fgnu89-inline to CFLAGS. - Re-enable hardening. - Add %license. - Modernize spec. * Wed Feb 03 2016 Fedora Release Engineering <releng@fedoraproject.org> - 0.7.0a-13 - Rebuilt for https://fedoraproject.org/wiki/Fedora_24_Mass_Rebuild * Sun Jul 05 2015 Adam Huffman <bloch@verdurin.com> - 0.7.0a-12 - Disable hardened build temporarily to work around configure problem * Wed Jun 17 2015 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 0.7.0a-11 - Rebuilt for https://fedoraproject.org/wiki/Fedora_23_Mass_Rebuild * Fri Aug 15 2014 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 0.7.0a-10 - Rebuilt for https://fedoraproject.org/wiki/Fedora_21_22_Mass_Rebuild * Sat Jun 07 2014 Adam Huffman <bloch@verdurin.com> - 0.7.0a-9 - More aarch64 build fixes - Update pthread patch * Sat Jun 07 2014 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 0.7.0a-8 - Rebuilt for https://fedoraproject.org/wiki/Fedora_21_Mass_Rebuild * Mon Jun 02 2014 Adam Huffman <bloch@verdurin.com> - 0.7.0a-7 - Fix for building on aarch64 * Sat Aug 03 2013 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 0.7.0a-6 - Rebuilt for https://fedoraproject.org/wiki/Fedora_20_Mass_Rebuild * Wed Jul 17 2013 Petr Pisar <ppisar@redhat.com> - 0.7.0a-5 - Perl 5.18 rebuild * Wed Feb 13 2013 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 0.7.0a-4 - Rebuilt for https://fedoraproject.org/wiki/Fedora_19_Mass_Rebuild * Wed Jul 18 2012 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 0.7.0a-3 - Rebuilt for https://fedoraproject.org/wiki/Fedora_18_Mass_Rebuild * Thu Jan 12 2012 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 0.7.0a-2 - Rebuilt for https://fedoraproject.org/wiki/Fedora_17_Mass_Rebuild * Tue Nov 01 2011 Adam Huffman <bloch@verdurin.com> - 0.7.0a-1 - new upstream release 0.7.0a including paired end and mate pair improvements * Fri May 27 2011 Adam Huffman <bloch@verdurin.com> - 0.6.5a-1 - new upstream release - remove obsolete file deletion * Mon Feb 07 2011 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 0.6.4e-2 - Rebuilt for https://fedoraproject.org/wiki/Fedora_15_Mass_Rebuild * Thu Oct 14 2010 Adam Huffman <bloch@verdurin.com> - 0.6.4e-1 - new upstream bugfix release - solid2fastq.pl removed upstream * Wed Jun 23 2010 Adam Huffman <bloch@verdurin.com> - 0.6.4d-5 - add MIT licence for kseq.h - improve description - clean up URL * Tue Jun 22 2010 Adam Huffman <bloch@verdurin.com> - 0.6.4d-4 - add temporary fix for problem with 32-bit build * Wed Jun 16 2010 Adam Huffman <bloch@verdurin.com> - 0.6.4d-3 - temporary release with solid2fastq.pl removed, to avoid conflict with bwa * Mon Jun 07 2010 Adam Huffman <bloch@verdurin.com> - 0.6.4d-2 - add BR for zlib and bz2 - patch to add pthread to linking stage - remove two docs installed by upstream Makefile, to avoid clash with docs * Thu Jun 03 2010 Adam Huffman <bloch@verdurin.com> - 0.6.4d-1 - initial version

Main Site Links:

Information for build bfast-0.7.0a-18.fc29