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Information for RPM R-ape-5.7.1-7.0.riscv64.fc41~bootstrap.riscv64.rpm

ID1422947
NameR-ape
Version5.7.1
Release7.0.riscv64.fc41~bootstrap
Epoch
Archriscv64
SummaryAnalyses of Phylogenetics and Evolution
DescriptionFunctions for reading, writing, plotting, and manipulating phylogenetic trees, analyses of comparative data in a phylogenetic framework, ancestral character analyses, analyses of diversification and macroevolution, computing distances from DNA sequences, reading and writing nucleotide sequences as well as importing from BioConductor, and several tools such as Mantel's test, generalized skyline plots, graphical exploration of phylogenetic data (alex, trex, kronoviz), estimation of absolute evolutionary rates and clock-like trees using mean path lengths and penalized likelihood, dating trees with non-contemporaneous sequences, translating DNA into AA sequences, and assessing sequence alignments. Phylogeny estimation can be done with the NJ, BIONJ, ME, MVR, SDM, and triangle methods, and several methods handling incomplete distance matrices (NJ*, BIONJ*, MVR*, and the corresponding triangle method). Some functions call external applications (PhyML, Clustal, T-Coffee, Muscle) whose results are returned into R.
Build Time2024-08-11 04:45:43 GMT
Size3.02 MB
924d2dfb5e8b1a51ace96bce60892ac3
LicenseGPL-2.0-only OR GPL-3.0-only
Buildrootf41-build-837374-159091
Provides
R(ape) = 5.7.1
R-ape = 5.7.1-7.0.riscv64.fc41~bootstrap
R-ape(riscv-64) = 5.7.1-7.0.riscv64.fc41~bootstrap
Obsoletes No Obsoletes
Conflicts No Conflicts
Requires
R(ABI) = 4.4
R(Rcpp) >= 0.12.0
R(digest)
R(graphics)
R(lattice)
R(methods)
R(nlme)
R(parallel)
R(stats)
R(utils)
R-core >= 3.2.0
ld-linux-riscv64-lp64d.so.1()(64bit)
ld-linux-riscv64-lp64d.so.1(GLIBC_2.27)(64bit)
libR.so()(64bit)
libc.so.6()(64bit)
libc.so.6(GLIBC_2.27)(64bit)
libflexiblas.so.3()(64bit)
libgcc_s.so.1()(64bit)
libgcc_s.so.1(GCC_3.0)(64bit)
libgcc_s.so.1(GCC_3.4)(64bit)
libm.so.6()(64bit)
libm.so.6(GLIBC_2.27)(64bit)
libstdc++.so.6()(64bit)
libstdc++.so.6(CXXABI_1.3)(64bit)
libstdc++.so.6(CXXABI_1.3.15)(64bit)
libstdc++.so.6(CXXABI_1.3.9)(64bit)
libstdc++.so.6(GLIBCXX_3.4)(64bit)
libstdc++.so.6(GLIBCXX_3.4.11)(64bit)
libstdc++.so.6(GLIBCXX_3.4.20)(64bit)
libstdc++.so.6(GLIBCXX_3.4.21)(64bit)
libstdc++.so.6(GLIBCXX_3.4.29)(64bit)
libstdc++.so.6(GLIBCXX_3.4.30)(64bit)
libstdc++.so.6(GLIBCXX_3.4.32)(64bit)
libstdc++.so.6(GLIBCXX_3.4.9)(64bit)
rpmlib(CompressedFileNames) <= 3.0.4-1
rpmlib(FileDigests) <= 4.6.0-1
rpmlib(PayloadFilesHavePrefix) <= 4.0-1
rpmlib(PayloadIsZstd) <= 5.4.18-1
rpmlib(TildeInVersions) <= 4.10.0-1
rtld(GNU_HASH)
Recommends No Recommends
Suggests
R(expm)
R(gee)
R(igraph)
R(phangorn)
Supplements No Supplements
Enhances No Enhances
Files
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/usr/lib/.build-id0.00 B
/usr/lib/.build-id/ee0.00 B
/usr/lib/.build-id/ee/ad0033392541a2ce31cb9b1610b478708e0e5f47.00 B
/usr/lib64/R/library/ape0.00 B
/usr/lib64/R/library/ape/CITATION589.00 B
/usr/lib64/R/library/ape/DESCRIPTION6.16 KB
/usr/lib64/R/library/ape/INDEX11.52 KB
/usr/lib64/R/library/ape/Meta0.00 B
/usr/lib64/R/library/ape/Meta/Rd.rds8.00 KB
/usr/lib64/R/library/ape/Meta/data.rds471.00 B
/usr/lib64/R/library/ape/Meta/features.rds126.00 B
/usr/lib64/R/library/ape/Meta/hsearch.rds7.86 KB
/usr/lib64/R/library/ape/Meta/links.rds4.28 KB
/usr/lib64/R/library/ape/Meta/nsInfo.rds3.81 KB
/usr/lib64/R/library/ape/Meta/package.rds2.51 KB
/usr/lib64/R/library/ape/Meta/vignette.rds260.00 B
/usr/lib64/R/library/ape/NAMESPACE11.37 KB
/usr/lib64/R/library/ape/NEWS93.00 B
/usr/lib64/R/library/ape/R0.00 B
/usr/lib64/R/library/ape/R/ape1.03 KB
/usr/lib64/R/library/ape/R/ape.rdb1.02 MB
/usr/lib64/R/library/ape/R/ape.rdx6.84 KB
/usr/lib64/R/library/ape/data0.00 B
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/usr/lib64/R/library/ape/data/carnivora.csv.gz3.46 KB
/usr/lib64/R/library/ape/data/chiroptera.rda11.69 KB
/usr/lib64/R/library/ape/data/cynipids.rda721.00 B
/usr/lib64/R/library/ape/data/gopher.D.rda1.23 KB
/usr/lib64/R/library/ape/data/hivtree.newick.rda2.14 KB
/usr/lib64/R/library/ape/data/hivtree.table.txt.gz1.01 KB
/usr/lib64/R/library/ape/data/lice.D.rda1.51 KB
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/usr/lib64/R/library/ape/data/mat3.RData714.00 B
/usr/lib64/R/library/ape/data/mat5M3ID.RData48.55 KB
/usr/lib64/R/library/ape/data/mat5Mrand.RData48.39 KB
/usr/lib64/R/library/ape/data/woodmouse.rda1.13 KB
/usr/lib64/R/library/ape/doc0.00 B
/usr/lib64/R/library/ape/doc/DrawingPhylogenies.R15.08 KB
/usr/lib64/R/library/ape/doc/DrawingPhylogenies.Rnw41.29 KB
/usr/lib64/R/library/ape/doc/DrawingPhylogenies.pdf701.28 KB
/usr/lib64/R/library/ape/doc/MoranI.R2.70 KB
/usr/lib64/R/library/ape/doc/MoranI.Rnw12.79 KB
/usr/lib64/R/library/ape/doc/MoranI.pdf207.30 KB
/usr/lib64/R/library/ape/doc/RandomTopologies.R8.03 KB
/usr/lib64/R/library/ape/doc/RandomTopologies.Rnw21.16 KB
/usr/lib64/R/library/ape/doc/RandomTopologies.pdf239.21 KB
/usr/lib64/R/library/ape/doc/index.html2.38 KB
Component of No Buildroots