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Information for RPM R-ape-5.3-3.fc31.riscv64.rpm

ID469617
NameR-ape
Version5.3
Release3.fc31
Epoch
Archriscv64
SummaryAnalyses of Phylogenetics and Evolution
DescriptionFunctions for reading, writing, plotting, and manipulating phylogenetic trees, analyses of comparative data in a phylogenetic framework, ancestral character analyses, analyses of diversification and macroevolution, computing distances from DNA sequences, reading and writing nucleotide sequences as well as importing from BioConductor, and several tools such as Mantel's test, generalized skyline plots, graphical exploration of phylogenetic data (alex, trex, kronoviz), estimation of absolute evolutionary rates and clock-like trees using mean path lengths and penalized likelihood, dating trees with non-contemporaneous sequences, translating DNA into AA sequences, and assessing sequence alignments. Phylogeny estimation can be done with the NJ, BIONJ, ME, MVR, SDM, and triangle methods, and several methods handling incomplete distance matrices (NJ*, BIONJ*, MVR*, and the corresponding triangle method). Some functions call external applications (PhyML, Clustal, T-Coffee, Muscle) whose results are returned into R.
Build Time2019-08-31 12:04:12 GMT
Size2.25 MB
f6ff0dd4abc85acacf9d2e33ea41b99d
LicenseGPLv2+
Buildrootf31-build-97137-32906
Provides
R(ape) = 5.3
R-ape = 5.3-3.fc31
R-ape(riscv-64) = 5.3-3.fc31
Obsoletes No Obsoletes
Conflicts No Conflicts
Requires
R(Rcpp) >= 0.12.0
R(graphics)
R(lattice)
R(methods)
R(nlme)
R(parallel)
R(stats)
R(tools)
R(utils)
R-core >= 3.2.0
ld-linux-riscv64-lp64d.so.1()(64bit)
ld-linux-riscv64-lp64d.so.1(GLIBC_2.27)(64bit)
libR.so()(64bit)
libRlapack.so()(64bit)
libc.so.6()(64bit)
libc.so.6(GLIBC_2.27)(64bit)
libgcc_s.so.1()(64bit)
libgcc_s.so.1(GCC_3.0)(64bit)
libgcc_s.so.1(GCC_3.3.1)(64bit)
libgcc_s.so.1(GCC_3.4)(64bit)
libm.so.6()(64bit)
libm.so.6(GLIBC_2.27)(64bit)
libstdc++.so.6()(64bit)
libstdc++.so.6(CXXABI_1.3)(64bit)
libstdc++.so.6(GLIBCXX_3.4)(64bit)
libstdc++.so.6(GLIBCXX_3.4.11)(64bit)
libstdc++.so.6(GLIBCXX_3.4.21)(64bit)
libstdc++.so.6(GLIBCXX_3.4.9)(64bit)
rpmlib(CompressedFileNames) <= 3.0.4-1
rpmlib(FileDigests) <= 4.6.0-1
rpmlib(PayloadFilesHavePrefix) <= 4.0-1
rpmlib(PayloadIsZstd) <= 5.4.18-1
rtld(GNU_HASH)
Recommends No Recommends
Suggests
R(expm)
R(gee)
R(igraph)
Supplements No Supplements
Enhances No Enhances
Files
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/usr/lib/.build-id0.00 B
/usr/lib/.build-id/e60.00 B
/usr/lib/.build-id/e6/c4efa0cc6b3bdc8bb69d0d1e91e4ced65ea1a947.00 B
/usr/lib64/R/library/ape0.00 B
/usr/lib64/R/library/ape/CITATION647.00 B
/usr/lib64/R/library/ape/DESCRIPTION4.43 KB
/usr/lib64/R/library/ape/INDEX11.28 KB
/usr/lib64/R/library/ape/Meta0.00 B
/usr/lib64/R/library/ape/Meta/Rd.rds7.80 KB
/usr/lib64/R/library/ape/Meta/data.rds483.00 B
/usr/lib64/R/library/ape/Meta/features.rds132.00 B
/usr/lib64/R/library/ape/Meta/hsearch.rds7.55 KB
/usr/lib64/R/library/ape/Meta/links.rds4.18 KB
/usr/lib64/R/library/ape/Meta/nsInfo.rds3.68 KB
/usr/lib64/R/library/ape/Meta/package.rds2.13 KB
/usr/lib64/R/library/ape/Meta/vignette.rds194.00 B
/usr/lib64/R/library/ape/NAMESPACE10.84 KB
/usr/lib64/R/library/ape/NEWS37.00 B
/usr/lib64/R/library/ape/R0.00 B
/usr/lib64/R/library/ape/R/ape1.03 KB
/usr/lib64/R/library/ape/R/ape.rdb987.81 KB
/usr/lib64/R/library/ape/R/ape.rdx6.26 KB
/usr/lib64/R/library/ape/data0.00 B
/usr/lib64/R/library/ape/data/HP.links.rda412.00 B
/usr/lib64/R/library/ape/data/bird.families.rda2.45 KB
/usr/lib64/R/library/ape/data/bird.orders.rda567.00 B
/usr/lib64/R/library/ape/data/carnivora.csv.gz3.46 KB
/usr/lib64/R/library/ape/data/chiroptera.rda11.69 KB
/usr/lib64/R/library/ape/data/cynipids.rda721.00 B
/usr/lib64/R/library/ape/data/gopher.D.rda1.23 KB
/usr/lib64/R/library/ape/data/hivtree.newick.rda2.14 KB
/usr/lib64/R/library/ape/data/hivtree.table.txt.gz1.01 KB
/usr/lib64/R/library/ape/data/lice.D.rda1.51 KB
/usr/lib64/R/library/ape/data/lmorigin.ex1.rda979.00 B
/usr/lib64/R/library/ape/data/lmorigin.ex2.rda455.00 B
/usr/lib64/R/library/ape/data/mat3.RData714.00 B
/usr/lib64/R/library/ape/data/mat5M3ID.RData48.55 KB
/usr/lib64/R/library/ape/data/mat5Mrand.RData48.39 KB
/usr/lib64/R/library/ape/data/woodmouse.rda1.13 KB
/usr/lib64/R/library/ape/doc0.00 B
/usr/lib64/R/library/ape/doc/MoranI.R2.65 KB
/usr/lib64/R/library/ape/doc/MoranI.Rnw12.53 KB
/usr/lib64/R/library/ape/doc/MoranI.pdf232.89 KB
/usr/lib64/R/library/ape/doc/index.html1.26 KB
/usr/lib64/R/library/ape/help0.00 B
/usr/lib64/R/library/ape/help/AnIndex9.95 KB
/usr/lib64/R/library/ape/help/aliases.rds3.57 KB
/usr/lib64/R/library/ape/help/ape.rdb658.70 KB
/usr/lib64/R/library/ape/help/ape.rdx3.99 KB
/usr/lib64/R/library/ape/help/paths.rds1.58 KB
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f31-build-114253-34434 2019-09-21 15:06:14 expired
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f31-build-98446-33048 2019-09-01 03:01:55 expired