| R(AnnotationDbi) |
| R(AnnotationHub) |
| R(BSgenome) |
| R(BSgenome.Hsapiens.UCSC.hg19) |
| R(BSgenome.Mmusculus.UCSC.mm10) |
| R(BSgenome.Scerevisiae.UCSC.sacCer2) |
| R(Biobase) |
| R(BiocStyle) |
| R(Biostrings) >= 2.25.3 |
| R(DESeq2) |
| R(DEXSeq) |
| R(GenomicAlignments) |
| R(GenomicFeatures) |
| R(Gviz) |
| R(KEGGREST) |
| R(KEGGgraph) |
| R(Matrix) |
| R(RNAseqData.HNRNPC.bam.chr14) |
| R(RUnit) |
| R(Rsamtools) >= 1.13.53 |
| R(SummarizedExperiment) >= 0.1.5 |
| R(TxDb.Athaliana.BioMart.plantsmart22) |
| R(TxDb.Dmelanogaster.UCSC.dm3.ensGene) |
| R(TxDb.Hsapiens.UCSC.hg19.knownGene) |
| R(TxDb.Mmusculus.UCSC.mm10.knownGene) |
| R(VariantAnnotation) |
| R(annotate) |
| R(digest) |
| R(edgeR) |
| R(hgu95av2.db) |
| R(hgu95av2probe) |
| R(knitr) |
| R(pasillaBamSubset) |
| R(rmarkdown) |
| R(rtracklayer) |
