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Information for RPM perl-GO-TermFinder-0.86-8.fc29.riscv64.rpm

ID87401
Nameperl-GO-TermFinder
Version0.86
Release8.fc29
Epoch
Archriscv64
SummaryIdentify GO nodes that annotate a group of genes with a significant p-value
DescriptionThis package is intended to provide a method whereby the P-values of a set of GO annotations can be determined for a set of genes, based on the number of genes that exist in the particular genome (or in a selected background distribution from the genome), and their annotation, and the frequency with which the GO nodes are annotated across the provided set of genes. The P-value is simply calculated using the hypergeometric distribution as the probability of x or more out of n genes having a given annotation, given that G of N have that annotation in the genome in general. We chose the hypergeometric distribution (sampling without replacement) since it is more accurate, though slower to calculate, than the binomial distribution (sampling with replacement).
Build Time2018-05-23 05:40:14 GMT
Size155.90 KB
a168dadf941f84c58d803237be6e3280
LicenseMIT
Buildrootf29-build-3617-933
Provides
perl(GO::AnnotatedGene) = 0.11
perl(GO::Annotation) = 0.11
perl(GO::AnnotationProvider) = 0.12
perl(GO::AnnotationProvider::AnnotationParser) = 0.15
perl(GO::Node) = 0.16
perl(GO::OntologyProvider) = 0.12
perl(GO::OntologyProvider::OboParser) = 0.01
perl(GO::OntologyProvider::OntologyParser) = 0.15
perl(GO::Reference) = 0.1
perl(GO::TermFinder) = 0.86
perl(GO::TermFinder::Native)
perl(GO::TermFinder::Native::Distributions)
perl(GO::TermFinder::Nativec)
perl(GO::TermFinderReport::Html) = 0.12
perl(GO::TermFinderReport::Text) = 0.10
perl(GO::Utils::File) = 0.12
perl(GO::Utils::General) = 0.11
perl(GO::View) = 0.15
perl(GO::View::GD) = 0.11
perl-GO-TermFinder = 0.86-8.fc29
perl-GO-TermFinder(riscv-64) = 0.86-8.fc29
Obsoletes No Obsoletes
Conflicts No Conflicts
Requires
ld-linux-riscv64-lp64d.so.1()(64bit)
ld-linux-riscv64-lp64d.so.1(GLIBC_2.27)(64bit)
libc.so.6()(64bit)
libc.so.6(GLIBC_2.27)(64bit)
libgcc_s.so.1()(64bit)
libgcc_s.so.1(GCC_3.0)(64bit)
libm.so.6()(64bit)
libm.so.6(GLIBC_2.27)(64bit)
libperl.so.5.26()(64bit)
libpthread.so.0()(64bit)
libpthread.so.0(GLIBC_2.27)(64bit)
libstdc++.so.6()(64bit)
libstdc++.so.6(CXXABI_1.3)(64bit)
libstdc++.so.6(CXXABI_1.3.9)(64bit)
libstdc++.so.6(GLIBCXX_3.4)(64bit)
perl(:MODULE_COMPAT_5.26.2)
perl(CGI)
perl(DynaLoader)
perl(Exporter)
perl(GD)
perl(GO::AnnotationProvider)
perl(GO::Node)
perl(GO::OntologyProvider)
perl(GO::TermFinder::Native)
perl(GO::View::GD)
perl(GraphViz)
perl(IO::File)
perl(Storable)
perl(base)
perl(diagnostics)
perl(strict)
perl(vars)
perl(warnings)
rpmlib(CompressedFileNames) <= 3.0.4-1
rpmlib(FileDigests) <= 4.6.0-1
rpmlib(PayloadFilesHavePrefix) <= 4.0-1
rpmlib(PayloadIsXz) <= 5.2-1
rtld(GNU_HASH)
Recommends No Recommends
Suggests No Suggests
Supplements No Supplements
Enhances No Enhances
Files
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Name ascending sort Size
/usr/lib/.build-id0.00 B
/usr/lib/.build-id/1c0.00 B
/usr/lib/.build-id/1c/bad149a8da2baf770f0d4346083101a0a3956c75.00 B
/usr/lib64/perl5/vendor_perl/GO0.00 B
/usr/lib64/perl5/vendor_perl/GO/AnnotatedGene.pm8.08 KB
/usr/lib64/perl5/vendor_perl/GO/Annotation.pm1.56 KB
/usr/lib64/perl5/vendor_perl/GO/AnnotationProvider0.00 B
/usr/lib64/perl5/vendor_perl/GO/AnnotationProvider.pm20.71 KB
/usr/lib64/perl5/vendor_perl/GO/AnnotationProvider/AnnotationParser.pm56.42 KB
/usr/lib64/perl5/vendor_perl/GO/Node.pm22.90 KB
/usr/lib64/perl5/vendor_perl/GO/OntologyProvider0.00 B
/usr/lib64/perl5/vendor_perl/GO/OntologyProvider.pm4.51 KB
/usr/lib64/perl5/vendor_perl/GO/OntologyProvider/OboParser.pm26.44 KB
/usr/lib64/perl5/vendor_perl/GO/OntologyProvider/OntologyParser.pm23.33 KB
/usr/lib64/perl5/vendor_perl/GO/Reference.pm1.44 KB
/usr/lib64/perl5/vendor_perl/GO/TermFinder0.00 B
/usr/lib64/perl5/vendor_perl/GO/TermFinder.pm66.44 KB
/usr/lib64/perl5/vendor_perl/GO/TermFinder/Native.pm2.10 KB
/usr/lib64/perl5/vendor_perl/GO/TermFinderReport0.00 B
/usr/lib64/perl5/vendor_perl/GO/TermFinderReport/Html.pm10.02 KB
/usr/lib64/perl5/vendor_perl/GO/TermFinderReport/Text.pm6.51 KB
/usr/lib64/perl5/vendor_perl/GO/Utils0.00 B
/usr/lib64/perl5/vendor_perl/GO/Utils/File.pm1.85 KB
/usr/lib64/perl5/vendor_perl/GO/Utils/General.pm2.33 KB
/usr/lib64/perl5/vendor_perl/GO/View0.00 B
/usr/lib64/perl5/vendor_perl/GO/View.pm67.04 KB
/usr/lib64/perl5/vendor_perl/GO/View/GD.pm19.14 KB
/usr/lib64/perl5/vendor_perl/auto0.00 B
/usr/lib64/perl5/vendor_perl/auto/GO0.00 B
/usr/lib64/perl5/vendor_perl/auto/GO-TermFinder0.00 B
/usr/lib64/perl5/vendor_perl/auto/GO/TermFinder0.00 B
/usr/lib64/perl5/vendor_perl/auto/GO/TermFinder/Native0.00 B
/usr/lib64/perl5/vendor_perl/auto/GO/TermFinder/Native/Native.so33.65 KB
/usr/share/doc/perl-GO-TermFinder0.00 B
/usr/share/doc/perl-GO-TermFinder/Changes15.50 KB
/usr/share/doc/perl-GO-TermFinder/README8.14 KB
/usr/share/licenses/perl-GO-TermFinder0.00 B
/usr/share/licenses/perl-GO-TermFinder/LICENSE1.13 KB
/usr/share/man/man3/GO::AnnotatedGene.3pm.gz2.15 KB
/usr/share/man/man3/GO::Annotation.3pm.gz1.14 KB
/usr/share/man/man3/GO::AnnotationProvider.3pm.gz4.53 KB
/usr/share/man/man3/GO::AnnotationProvider::AnnotationParser.3pm.gz6.93 KB
/usr/share/man/man3/GO::Node.3pm.gz3.27 KB
/usr/share/man/man3/GO::OntologyProvider.3pm.gz1.73 KB
/usr/share/man/man3/GO::OntologyProvider::OboParser.3pm.gz3.63 KB
/usr/share/man/man3/GO::OntologyProvider::OntologyParser.3pm.gz3.66 KB
/usr/share/man/man3/GO::Reference.3pm.gz1.09 KB
/usr/share/man/man3/GO::TermFinder.3pm.gz6.51 KB
/usr/share/man/man3/GO::TermFinderReport::Html.3pm.gz2.50 KB
/usr/share/man/man3/GO::TermFinderReport::Text.3pm.gz2.01 KB
Component of No Buildroots